After Raising $59M, aTyr Plans Physiocrines Proof-of-Concept Trials

San Diego’s aTyr Pharma says today it has closed on $59 million in a Series D financing to advance its development of a new class of protein-based drugs for treating rare immune diseases.

The $59 million deal includes $49 million in venture funding raised in recent months from an unnamed “global public investment fund” and aTyr’s existing venture investors—Alta Partners, Cardinal Partners, Domain Associates, and Polaris Partners. Silicon Valley Bank provided an additional $10 million in debt financing.

The Series D deal is bigger than the $47 million in total venture capital funding that aTyr raised through three previous rounds, aTyr CEO John Mendlein told me in a recent telephone interview (and brings total funding to $108 million since aTyr was founded eight years ago). The latest round is intended to enable aTyr to bring its first therapeutic program into the clinic and to continue to build out the company’s pipeline of additional therapies, Mendlein said.

The funding should enable aTyr, (pronounced A-tire), to stage multiple human proof-of-concept trials of drugs derived from a new class of natural proteins called “physiocrines” that represent a promising new area of biology. Research led by Dr. Paul Schimmel of The Scripps Research Institute and others showed that physiocrines are naturally occurring proteins (derived from tRNA synthetases) that regulate immune response and help maintain homeostasis, or equilibrium. Schimmel is a scientific founder of aTyr, and continues to serve on the company’s board.

“These new proteins are associated with an ancient gene family previously associated with protein synthesis,” Mendlein said. “We’ve discovered new pathways in modulating the immune system that were previously unknown.” Instead of blocking or inhibiting target molecules, however, Mendlein said physiocrines act sort of like a carburetor, by revving up or throttling back an immune response rather than turning it off completely.

The company maintains that physiocrines offer potential therapeutic advantages to existing anti-inflammatory drugs through improved selectivity, efficacy, and reduced side effects.

Since Mendlein stepped in as aTyr’s CEO at the end of 2011 (he retained his executive chairman title), the company has narrowed its

Author: Bruce V. Bigelow

In Memoriam: Our dear friend Bruce V. Bigelow passed away on June 29, 2018. He was the editor of Xconomy San Diego from 2008 to 2018. Read more about his life and work here. Bruce Bigelow joined Xconomy from the business desk of the San Diego Union-Tribune. He was a member of the team of reporters who were awarded the 2006 Pulitzer Prize in National Reporting for uncovering bribes paid to San Diego Republican Rep. Randy “Duke” Cunningham in exchange for special legislation earmarks. He also shared a 2006 award for enterprise reporting from the Society of Business Editors and Writers for “In Harm’s Way,” an article about the extraordinary casualty rate among employees working in Iraq for San Diego’s Titan Corp. He has written extensively about the 2002 corporate accounting scandal at software goliath Peregrine Systems. He also was a Gerald Loeb Award finalist and National Headline Award winner for “The Toymaker,” a 14-part chronicle of a San Diego start-up company. He takes special satisfaction, though, that the series was included in the library for nonfiction narrative journalism at the Nieman Foundation for Journalism at Harvard University. Bigelow graduated from U.C. Berkeley in 1977 with a degree in English Literature and from the Columbia University Graduate School of Journalism in 1979. Before joining the Union-Tribune in 1990, he worked for the Associated Press in Los Angeles and The Kansas City Times.