Cypher Genomics’ Analytics Tech Gains Some Cred in Illumina Deal

a drug trial against the Wellderly database, Cypher says it can identify genetic disparities in a patient group far more accurately.

In this way, Cypher says its technology can resolve the “signal-to-noise” problem that makes it difficult for researchers to find important biomarkers in small sample sizes of a few hundred patients or less, the size typically selected for early-stage drug development. With the approach that Cypher is taking, identifying key genetic markers becomes more of a pattern-recognition problem—albeit one that requires comparing enormous sets of genomic data, with each set involving billions of DNA base pairs.

So Cypher’s aspirations to become the Google of bioinformatics may not be too far-fetched, after all.

In a statement today, Van Zeeland says, Cypher’s biomarker discover service “has a proven track record of success with pharmaceutical companies to discover the genetic bases of response to drug therapy.”

In addition to identifying the variant genes responsible for disease, Cypher says it can use its computational analytics to identify additional genetic markers that correlate with patients who respond to a particular drug therapy.

Identifying the variant genes responsible for disease, and correlating the genes that correspond with different drug therapies represents the basis of precision medicine. But it is a burgeoning field of R&D, and Cypher Genomics hardly has the field to itself. The list of other startups working to commercialize their own technologies for using genomic data include Knome, SolveBio, Appistry, Silicon Valley Biosystems, Ingenuity, DNAnexus, and Curoverse.

Henry "Hank" Nordhoff
Henry “Hank” Nordhoff

In a separate statement, Cypher said that Gen-Probe founder and CEO Henry “Hank” Nordhoff recently joined the company’s board as executive chairman. The company also named Genentech co-founder Herb Boyer and former FDA commissioner Andrew von Eschenbach as directors.

Simpson emphasized that Nordhoff, Boyer, and von Eschenbach bring deep experience in biomedical diagnostics, biotechnology, and regulatory matters to Cypher’s already-prominent leadership.

“These folks wouldn’t be interested in [Cypher] if they didn’t think there wasn’t a big business to be developed here,” Simpson said.

Author: Bruce V. Bigelow

In Memoriam: Our dear friend Bruce V. Bigelow passed away on June 29, 2018. He was the editor of Xconomy San Diego from 2008 to 2018. Read more about his life and work here. Bruce Bigelow joined Xconomy from the business desk of the San Diego Union-Tribune. He was a member of the team of reporters who were awarded the 2006 Pulitzer Prize in National Reporting for uncovering bribes paid to San Diego Republican Rep. Randy “Duke” Cunningham in exchange for special legislation earmarks. He also shared a 2006 award for enterprise reporting from the Society of Business Editors and Writers for “In Harm’s Way,” an article about the extraordinary casualty rate among employees working in Iraq for San Diego’s Titan Corp. He has written extensively about the 2002 corporate accounting scandal at software goliath Peregrine Systems. He also was a Gerald Loeb Award finalist and National Headline Award winner for “The Toymaker,” a 14-part chronicle of a San Diego start-up company. He takes special satisfaction, though, that the series was included in the library for nonfiction narrative journalism at the Nieman Foundation for Journalism at Harvard University. Bigelow graduated from U.C. Berkeley in 1977 with a degree in English Literature and from the Columbia University Graduate School of Journalism in 1979. Before joining the Union-Tribune in 1990, he worked for the Associated Press in Los Angeles and The Kansas City Times.