San Diego Startup Raises $2.3M to Advance Enzymatic DNA Synthesis

Molecular Assemblies Team 12/2016 (Molecular Assemblies photo, used with permission)

Molecular Assemblies, a San Diego startup developing a new enzymatic method for synthesizing DNA, said today it has raised $2.3 million in a seed financing round.

The funding will be used to hire more scientists and to advance the company’s development of enzymatic DNA synthesis technology, CEO Michael Kamdar said in an interview Friday. Molecular Assemblies says its enzymatic approach for making DNA was inspired by the way nature makes DNA. Investors include Agilent Technologies, the Cavendish Impact Capital Fund, Eleven Two Capital, San Diego angel investor Taner Halicioglu’s Keshif Ventures, Genomics Investment Syndicate, Newport Holdings, and Alexandria Venture Investments.

According to Kamdar, Molecular Assemblies is on the cusp of introducing a new process for making DNA to customer specifications that would result in higher-quality and longer DNA strands, with more accurate sequencing of base pairs. The company was founded in 2013 by chief scientific officer Bill Efcavitch and chief commercial officer Curt Becker, and now has eight employees (pictured above, with chairman Larry Stambaugh, center).

Efcavitch and Becker were early employees at Foster City, CA-based Applied Biosystems, a pioneering supplier of biochemicals used to synthesize DNA and RNA molecules as well as automated genetic engineering and diagnostic research instruments services. San Diego-based Invitrogen merged with Applied Biosystems in a $6.7 billion buyout in 2008; the combined company was renamed Life Technologies and is now owned by Thermo Fisher Scientific.

As the DNA revolution has unfolded over the past 50 years or so, companies like Applied Biosystems, Germany’s GeneArt, and Bothell, WA-based Blue Heron Biotechnology became key industry innovators by supplying the basic chemical building blocks and services that scientists need to synthesize DNA and RNA molecules.

But nowadays, “we’re seeing issues around quality, length [of DNA fragments] and processing,” said Molecular Assemblies’ Kamdar. The synthetic biology marketplace is largely based now on phosphoramidite synthetic chemistry, which Kamdar described as “a multi-step chemical process that generates lots of [toxic] waste chemicals.”

Molecular Assemblies says new methods of writing genetic code to customer specifications are needed to realize the promise of next-generation genomics, from personalized DNA-based therapies and diagnostics to industrial applications of synthetic biology.

In recent years, companies like Cambridge, MA-based Gen9 and San Francisco-based Twist Bioscience have emerged in the relatively new field of synthetic biology to supply built-to-order strands of DNA. In 2015, San Diego’s Synthetic Genomics introduced a personal DNA work station that enables scientists to make their own synthetic DNA fragments.

Efcavitch and Becker began their work on an enzymatic approach to making DNA at JLABS San Diego, a biotech incubator operating under the auspices of Johnson and Johnson Innovation, and have been issued patents in both the United States and Europe, Kamdar said.

Author: Bruce V. Bigelow

In Memoriam: Our dear friend Bruce V. Bigelow passed away on June 29, 2018. He was the editor of Xconomy San Diego from 2008 to 2018. Read more about his life and work here. Bruce Bigelow joined Xconomy from the business desk of the San Diego Union-Tribune. He was a member of the team of reporters who were awarded the 2006 Pulitzer Prize in National Reporting for uncovering bribes paid to San Diego Republican Rep. Randy “Duke” Cunningham in exchange for special legislation earmarks. He also shared a 2006 award for enterprise reporting from the Society of Business Editors and Writers for “In Harm’s Way,” an article about the extraordinary casualty rate among employees working in Iraq for San Diego’s Titan Corp. He has written extensively about the 2002 corporate accounting scandal at software goliath Peregrine Systems. He also was a Gerald Loeb Award finalist and National Headline Award winner for “The Toymaker,” a 14-part chronicle of a San Diego start-up company. He takes special satisfaction, though, that the series was included in the library for nonfiction narrative journalism at the Nieman Foundation for Journalism at Harvard University. Bigelow graduated from U.C. Berkeley in 1977 with a degree in English Literature and from the Columbia University Graduate School of Journalism in 1979. Before joining the Union-Tribune in 1990, he worked for the Associated Press in Los Angeles and The Kansas City Times.